The list might not be complete.

http://erc.europa.eu/
THE ERC supports junior scientists with ERC Starting Grants and senior scientists with ERC Advanced Grants. more
http://www.berg-stiftung.de/
The foundation supports medical science and research. Applications can only be handed in in response to an open call. more
http://fonds.vci.de/
The foundation awards fellowships to students enrolled to become teachers, to PhD students, and to junior professors active in the areas of chemistry. Universities and research organizations can apply for funding for research, teaching, and conferences related to chemistry and adjacent areas. more
http://www.fonte-stiftung.de/
The foundation supports individuals who have already earned their university degrees. Applicants from the humanities can apply for funding for long-term research projects (e.g., doctoral theses, “Habilitation” theses, etc.) as well as for short-term projects (e.g., colloquia, research travels) and for the covering of printing costs or the like. more
http://www.fritz-thyssen-stiftung.de/
The foundation supports
- fixed-term research projects
- junior scientists (postdoc level) with fellowships
- small-scale scientific conferences
- to a limited extent, the publication of research results obtained in funded projects
Applications can only be handed in by researchers already working for a university or a non-profit research organization in Germany or abroad. more
http://www.gerda-henkel-stiftung.de/
The foundation supports fixed-term research projects in the humanities carried out at universities and research institutions. The focus is on postdocs in historical humanities, in science history and historical sub-disciplines, both in Germany and abroad. more
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